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For window users,how to select Macro name, Host name and program pathname. I am having error
When we add a ligand, it appears "inside" the protein. Why is this the case? Is it possible to somehow adjust the field so that there is a space between the ligand and the protein?
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Outline:Open the saved .psf session file in ADT. Save the receptor file as pdbqt file. About the grid box. Set the grid box parameters. Create a grid for the receptor molecule. Save the grid box properties as .gpf file. Run the AutoGrid program. Open the output .glg file using text editor. Check the output .glg file for the successful running of the AutoGrid program.
Open the saved .psf session file in ADT. Save the receptor file as pdbqt file. About the grid box. Set the grid box parameters. Create a grid for the receptor molecule. Save the grid box properties as .gpf file. Run the AutoGrid program. Open the output .glg file using text editor. Check the output .glg file for the successful running of the AutoGrid program.
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